Zespół polimorfizmu genomów
Kierownik: prof. dr hab. Hanna Bolibok-Bragoszewska
Zespół: dr David Chan-Rodriguez, dr Sirine Werghi, dr Alexander Milovanov, Brian Wakimwayi Koboyi, Sikandar Shah
Studenci i praktykanci: Rabia Ahmed
W przeszłości:
Doktoranci: Ewa Borzęcka
Studenci i praktykanci: Maksymilian Królik, Aleksandra Paradowska, Julia Maksymiuk, Shafeeq ur Rehman, Marianna Droszcz, Adam Kral, Oliwia Kielak, Maria Jóźwiak, Waseem Ahmad, Romain Borras, Alois Maillard, Yaren Elmas, Hilderlith Awuor Abuya, Ilteris Kutlug Onal, Beyza Nur Telli, Mertcan Gulben, Simran Asawa, Macarena Pozo Morales, Timea Papp, Alexandra Kiss, Usman Khalid Chaudhry, Anna Ringauf, Kathrin Schmittner, Shivaksh Ahluvalia, Fatemeh Shoormij, Saida Sharifova
Problematyka badawcza:
- Genetyczne uwarunkowania tolerancji niedoboru fosforu u żyta
- Charakterystyka zróżnicowania genetycznego zasobów genowych
- Identyfikacja i charakterystyka rejonów genomu żyta poddanych presji selekcyjnej
Projekty badawcze:
- Odpowiedź na niedobór fosforu u żyta (Secale cereale) – różne poziomy (molekularne, morfologiczne) i wzory przestrzenno-czasowe, 2025-2029 – projekt NCN OPUS28 nr 2024/55/B/NZ9/00950
- Identyfikacja i charakterystyka genów warunkujących tolerancję niedoboru fosforu u żyta (Secale cereale) – rośliny o wysokiej tolerancji niedoboru składników pokarmowych, 2021-2027 – projekt NCN OPUS19 nr 2020/37/B/NZ9/00738
- Wpływ selekcji na genom rośliny uprawnej – identyfikacja i charakterystyka sekwencji, na które nakierowana była presja selekcyjna w trakcie udomowienia i hodowli żyta (Secale cereale L.), 2015-2021, projekt NCN Sonata Bis 4 nr 2014/14/E/NZ9/00285
- Eksploracja regionów bogatych w geny u gatunku o dużym genomie (Secale cereale L.) z wykorzystaniem markerów DArT, 2012-2015, projekt NCN Opus 2 nr 2011/03/B/NZ2/02480
- Kompleksowa charakterystyka molekularna zróżnicowania genetycznego uprawnych i dzikich form w rodzaju Secale, 2010-2013, projekt własny MNiSW, nr NN310 080139
Publikacje (5 wybranych):
Chan-Rodriguez D, Koboyi BW, Werghi S, Till BJ, Maksymiuk J, Shoormij F, Hilderlith A, Hawliczek A, Królik M, Bolibok-Brągoszewska H (2025) Phosphate transporter (Pht) gene families in rye (Secale cereale L.) -genome-wide identification, characterization and sequence diversity assessment via DArTreseq. Frontiers in Plant Science 16:x doi: https://doi.org/10.3389/fpls.2025.1529358
Shroomji F, Mirlohi A,, Chan-Rodriguez D, Bolibok-Brągoszewska H, Saeidi G, 2023. Characterization of 14 Triticum species for the NAM-B1 gene and its associated traits. PLoS ONE, 18(8): e0287798, https://doi.org/10.1371/journal.pone.0287798
Hawliczek A, Borzecka E, Tofil K, Alachiotis N, Bolibok L, Gawroński P, Siekmann D, Hackauf B, Dusinsky R, Svec M, Bolibok-Brągoszewska H. (2023) Selective sweeps identification in distinct groups of cultivated rye (Secale cereale L.) germplasm provides potential candidate genes for crop improvement. BMC Plant Biology 23:323, https://doi.org/10.1186/s12870-023-04337-1.
Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T e al. 2021. Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics 53: 564–573, DOI: https://doi.org/10.1038/s41588-021-00807-0
Hawliczek A, Bolibok L, Tofil K, Borzęcka E, Jankowicz-Cieślak J, Gawroński P, Kral A, Till BJ, Bolibok-Brągoszewska H. (2020) Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions. BMC Genomics 21:845; DOI: https://doi.org/10.1186/s12864-020-07240-3
Rozstrzygnięcie konkursu na stypendium naukowe NCN dla doktoranta w projekcie Opus 28 nr 2024/55/B/NZ9/00950
10.08.2025
Informujemy, że Komisja rekrutacyjna postanowiła zaproponować stanowisko doktoranta stypendysty w projekcie Opus 28 nr 2024/55/B/NZ9/00950 panu Sikandarowi Shah
Informacja o wynikach naboru na stanowisko post-doc w ramach projektu OPUS28 nr 2024/55/B/NZ/00950
07.08.2025
Informujemy, że komisja rekrutacyjna postanowiła zaproponować stanowisko biotechnologa (post-doc) w ramach projektu OPUS28 nr 2024/55/B/NZ/00950 Narodowego Centrum Nauki panu dr Alexandrowi Milovanov
Konkurs na stypendium naukowe NCN dla doktoranta w projekcie Opus 28 nr UMO-2024/55/B/NZ9/0095
22.07.2025
Institution:
Warsaw University of Life Sciences, Institute of Biology, Department of Plant Genetics, Breeding and Biotechnology, Warsaw, Poland
Position: PhD student
Requirements:
– Master of Science in biology, biotechnology or related field
– Basic knowledge of molecular biology techniques (DNA/RNA isolation, PCR, electrophoresis, cloning);
– Basic experience with plant cultivation;
– Knowledge of basic bioinformatics methods;
– Excellent knowledge of EnglishJob description:
We are seeking a motivated individual to work as a PhD student at the Department of Plant Genetics Breeding and Biotechnology in an OPUS project (National Science Centre, NCN).
The aim is to precisely characterise various aspect of rye P deficiency response with the overall goal of identifying the key components involved in the molecular regulation of this process. The changes caused by P-deficiency in plants occur at different, molecular and morphological levels and there are multiple response mechanisms, universal and species-specific.
Within the announced PhD research we propose to (i) gain precise information on the patterns of rye P-deficiency response by analysis of expression levels of selected genes over time and in different plant organs, (ii) perform observations of root anatomical and architectural traits to understand how root system responds to P-deficiency and what root traits differentiate rye inbred lines with contrasting P-deficiency response, (iii) discover how plant growth promoting rhizobacteria (PGPR) influence performance of rye inbred lines and the expression of selected P-deficiency response related genes.The research involves:
– participation in cultivation of rye plants in hydroponic conditions, tissue collection
– participation in phenotyping of root anatomical and architectural traits
– participation in sectioning and preparing tissues for spatial transcriptomics
– evaluation of gene expression levels via qRTPCR
– participation in bioinformatical and statistical analyses
– reporting, preparation of publication manuscripts, and public presentation of results.Contract conditions:
Period of 48 months; initially scholarship of PLN 5,000/month. After the mid-term evaluation, scholarship of PLN 6,500/month.How to apply:
Please send applications or additional questions by email to Prof. Hanna Bolibok-Brągoszewska at: hanna_bolibok_bragoszewska@sggw.edu.pl. Selected candidates will be invited for an online/on-site interview. The application should be prepared as a single PDF file in English and include:
• a one-page cover letter describing the candidate’s motivation,
• curriculum vitae, including a list of publications,
• letter(s) of recommendation – at least one should come from the direct supervisor,
• scan of certificates/diplomas of completion of second-cycle studies (Master’s studies),The application must include the following statement: „In accordance with art. 6 sec. 1 letter a) of the general data protection regulation of 27 April 2016 (OJ EU L 119/1 of 4 May 2016), I consent to the processing of personal data other than those indicated in art. 221 of the Labor Code, first name(s) and last name; parents’ names; date of birth; place of residence; correspondence address; education; previous employment, which are included in my job offer for current recruitment.”
Application deadline: 1st August 2025, 23:59 Warsaw time